HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9o3h

System information

Experimental technique X-ray
Experimental resolution 2.65
System mass 4571.80 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 9o3h
Reference Syroegin Egor A., Aleksandrova Elena V., Kruglov Artem A., Paranjpe Madhura N., Svetlov Maxim S., Polikanov Yury S.. . Structural insights into context-specific inhibition of bacterial translation by macrolides []
Equivalence Class NR_all_97519.80
BGSU version: 4.48

Compound ERY
Residue . / 4104
Chain VTA / 1A
Non-redundant True
Interacting RNA chains A/1A
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains A/1A: rRNA
RNA family global rRNA
Volume 155.04 Å3
Hydrophobicity 0.190
Hydrophilicity 0.924
Buriedness 0.546
Don/acc character 0.980
SiteScore 0.801
D Score 0.813
Kd

Compound ERY
Residue . / 3859
Chain BSC / 2A
Non-redundant True
Interacting RNA chains FB/2A
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains FB/2A: rRNA
RNA family global rRNA
Volume 201.68 Å3
Hydrophobicity 0.371
Hydrophilicity 0.904
Buriedness 0.604
Don/acc character 1.181
SiteScore 0.934
D Score 0.970
Kd