HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9ndx

System information

Experimental technique Electron Microscopy
Experimental resolution 2.94
System mass 107.52 kDa
Deposition year 2025
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 9ndx
Equivalence Class NR_all_84487.1
BGSU version: 4.49

Compound QI9
Residue . / 201
Chain C / A
Non-redundant False
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: aptamer_rna
RNA family global aptamer_rna
Volume 205.46 Å3
Hydrophobicity 0.652
Hydrophilicity 0.633
Buriedness 0.616
Don/acc character 2.449
SiteScore 1.054
D Score 0.949
Kd

Compound QI9
Residue . / 201
Chain D / B
Non-redundant False
Interacting RNA chains B/B
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/B: aptamer_rna
RNA family global aptamer_rna
Volume 283.66 Å3
Hydrophobicity 0.439
Hydrophilicity 0.827
Buriedness 0.633
Don/acc character 2.170
SiteScore 1.087
D Score 0.972
Kd