HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9ndd

System information

Experimental technique Electron Microscopy
Experimental resolution 2.67
System mass 206.44 kDa
Deposition year 2025
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 9ndd
Equivalence Class NR_all_15101.1
BGSU version: 4.49

Compound OXG
Residue . / 201
Chain E / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: riboswitch
RNA family global riboswitch
Volume 95.01 Å3
Hydrophobicity 0.000
Hydrophilicity 1.705
Buriedness 0.734
Don/acc character 0.801
SiteScore 0.769
D Score 0.305
Kd —

Compound OXG
Residue . / 201
Chain F / B
Non-redundant False
Interacting RNA chains B/B
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/B: riboswitch
RNA family global riboswitch
Volume 169.79 Å3
Hydrophobicity 0.073
Hydrophilicity 1.129
Buriedness 0.666
Don/acc character 1.145
SiteScore 0.870
D Score 0.640
Kd —

Compound OXG
Residue . / 201
Chain G / C
Non-redundant False
Interacting RNA chains C/C
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains C/C: riboswitch
RNA family global riboswitch
Volume 42.53 Å3
Hydrophobicity 0.593
Hydrophilicity 1.392
Buriedness 0.957
Don/acc character 1.418
SiteScore 0.822
D Score 0.418
Kd —

Compound OXG
Residue . / 201
Chain H / D
Non-redundant False
Interacting RNA chains D/D
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains D/D: riboswitch
RNA family global riboswitch
Volume 157.44 Å3
Hydrophobicity 0.053
Hydrophilicity 1.154
Buriedness 0.661
Don/acc character 1.158
SiteScore 0.850
D Score 0.608
Kd —