Complex 9gmt
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 1.93 |
| System mass | 196.91 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Mycobacterium |
| RCSB PDB Entry | 9gmt |
| Reference | Griesser Tizian, Wang Rui, Angona Irene Pachon, Rogenmoser Janis, Obrist Julia, Schneider Gisbert, Sander Peter. 2025. Selective inhibition of Mycobacterium tuberculosis GpsI unveils a novel strategy to target the RNA metabolism Nucleic Acids Research |
| Equivalence Class |
NR_all_78432.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | A1IM2 |
| Residue | . / 601 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | D/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/E: unknown |
| RNA family global | unknown |
| Volume | 400.28 Å3 |
| Hydrophobicity | 0.297 |
| Hydrophilicity | 1.172 |
| Buriedness | 0.730 |
| Don/acc character | 0.810 |
| SiteScore | 1.021 |
| D Score | 0.996 |
| Kd | — |
| Compound | A1IM2 |
| Residue | . / 601 |
| Chain | F / B |
| Non-redundant | True |
| Interacting RNA chains | D/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/E: unknown |
| RNA family global | unknown |
| Volume | 536.45 Å3 |
| Hydrophobicity | 0.102 |
| Hydrophilicity | 1.462 |
| Buriedness | 0.754 |
| Don/acc character | 0.611 |
| SiteScore | 1.038 |
| D Score | 0.916 |
| Kd | — |
| Compound | A1IM2 |
| Residue | . / 601 |
| Chain | G / C |
| Non-redundant | True |
| Interacting RNA chains | D/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/E: unknown |
| RNA family global | unknown |
| Volume | 638.32 Å3 |
| Hydrophobicity | 0.347 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.722 |
| Don/acc character | 0.566 |
| SiteScore | 1.016 |
| D Score | 1.012 |
| Kd | — |