Complex 9g06
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.85 |
| System mass | 835.76 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 9g06 |
| Reference | Safdari Haaris A., Morici Martino, Sanchez-Castro Ana, Dallapè Andrea, Paternoga Helge, Giuliodori Anna Maria, Fabbretti Attilio, Milón Pohl, Wilson Daniel N.. 2025. The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation Nature Communications |
| Equivalence Class |
NR_all_56726.172
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | A1IC4 |
| Residue | . / 1673 |
| Chain | UC / B |
| Non-redundant | True |
| Interacting RNA chains | S/Y, U/B |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | S/Y: mRNA, U/B: rRNA |
| RNA family global | multiple |
| Volume | 269.94 Å3 |
| Hydrophobicity | 0.326 |
| Hydrophilicity | 0.900 |
| Buriedness | 0.761 |
| Don/acc character | 2.395 |
| SiteScore | 1.059 |
| D Score | 0.719 |
| Kd | — |