HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9dts

System information

Experimental technique X-ray
Experimental resolution 1.69
System mass 194.60 kDa
Deposition year 2024
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9dts
Reference Conley James F., Brown Lauren E., McNeely James H., Pelletier Jerry, Porco John A., Allen Karen N.. . Structural Basis for the Improved RNA Clamping of Amidino-Rocaglates to eIF4A1 ACS Omega
Equivalence Class NR_all_45897.2, NR_all_85544.2
BGSU version: 4.49

Compound A1BB1
Residue . / 503
Chain Q / D
Non-redundant True
Interacting RNA chains H/Z
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains H/Z: unknown
RNA family global unknown
Volume 190.37 Å3
Hydrophobicity 0.802
Hydrophilicity 0.582
Buriedness 0.586
Don/acc character 1.567
SiteScore 0.788
D Score 0.813
Kd —

Compound A1BB1
Residue . / 101
Chain R / W
Non-redundant False
Interacting RNA chains E/W
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains E/W: unknown
RNA family global unknown
Volume 236.33 Å3
Hydrophobicity 0.845
Hydrophilicity 0.775
Buriedness 0.630
Don/acc character 1.220
SiteScore 0.895
D Score 0.923
Kd —

Compound A1BB1
Residue . / 101
Chain S / X
Non-redundant False
Interacting RNA chains F/X
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains F/X: unknown
RNA family global unknown
Volume 201.34 Å3
Hydrophobicity 0.875
Hydrophilicity 0.586
Buriedness 0.581
Don/acc character 1.299
SiteScore 0.867
D Score 0.915
Kd —

Compound A1BB1
Residue . / 101
Chain T / Y
Non-redundant False
Interacting RNA chains G/Y
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains G/Y: unknown
RNA family global unknown
Volume 250.05 Å3
Hydrophobicity 0.767
Hydrophilicity 0.842
Buriedness 0.597
Don/acc character 1.309
SiteScore 0.949
D Score 0.995
Kd —