Complex 9d0j
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 4566.04 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 9d0j |
| Reference | Tresco Ben I. C., Wu Kelvin J. Y., Ramkissoon Antonio, Aleksandrova Elena V., Purdy Michael, See Dominic N. Y., Liu Richard Y., Polikanov Yury S., Myers Andrew G.. . Discovery of a fluorinated macrobicyclic antibiotic through chemical synthesis Nature Chemistry |
| Equivalence Class |
NR_all_35542.165,
NR_all_97519.80
BGSU version: 4.48 |
| Compound | A1A1L |
| Residue | . / 4060 |
| Chain | BSA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A, CB/1x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA, CB/1x: mRNA |
| RNA family global | multiple |
| Volume | 765.92 Å3 |
| Hydrophobicity | 0.215 |
| Hydrophilicity | 1.735 |
| Buriedness | 0.778 |
| Don/acc character | 0.381 |
| SiteScore | 1.203 |
| D Score | 0.841 |
| Kd | — |
| Compound | A1A1L |
| Residue | . / 3783 |
| Chain | LMC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A, GD/2x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/2A: rRNA, GD/2x: mRNA |
| RNA family global | multiple |
| Volume | 378.33 Å3 |
| Hydrophobicity | 1.278 |
| Hydrophilicity | 0.900 |
| Buriedness | 0.844 |
| Don/acc character | 1.309 |
| SiteScore | 1.275 |
| D Score | 1.153 |
| Kd | — |