Complex 9d0g
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 4571.52 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 9d0g |
| Reference | Wu Kelvin J.Y., Aleksandrova Elena V., Robinson Paul J., Benedetto Amy E., Yu Meiyi, Tresco Ben I.C., See Dominic N.Y., Jiang Tong, Ramkissoon Antonio, Dunand Clémence F., Svetlov Maxim S., Lee Joonho, Polikanov Yury S., Myers Andrew G.. . Why sulfur is important in lincosamide antibiotics Chem |
| Equivalence Class |
NR_all_35542.165,
NR_all_97519.80
BGSU version: 4.48 |
| Compound | A1A1F |
| Residue | . / 4110 |
| Chain | ZTA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A, CB/1x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA, CB/1x: mRNA |
| RNA family global | multiple |
| Volume | 592.70 Å3 |
| Hydrophobicity | 0.255 |
| Hydrophilicity | 2.230 |
| Buriedness | 0.834 |
| Don/acc character | 0.354 |
| SiteScore | 1.241 |
| D Score | 0.714 |
| Kd | — |
| Compound | A1A1F |
| Residue | . / 3875 |
| Chain | ATC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A, GD/2x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/2A: rRNA, GD/2x: mRNA |
| RNA family global | multiple |
| Volume | 749.46 Å3 |
| Hydrophobicity | 0.795 |
| Hydrophilicity | 1.266 |
| Buriedness | 0.795 |
| Don/acc character | 0.848 |
| SiteScore | 1.215 |
| D Score | 1.004 |
| Kd | — |