HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8y5p

System information

Experimental technique Electron Microscopy
Experimental resolution 6.50
System mass 2785.54 kDa
Deposition year 2024
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 8y5p
Equivalence Class NR_all_83717.186
BGSU version: 4.49

Compound GDP
Residue . / 801
Chain QB / 0
Non-redundant True
Interacting RNA chains YA/1
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains YA/1: rRNA
RNA family global rRNA
Volume 798.16 Å3
Hydrophobicity 0.168
Hydrophilicity 1.593
Buriedness 0.846
Don/acc character 1.007
SiteScore 1.099
D Score 0.929
Kd