HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8y5o

System information

Experimental technique Electron Microscopy
Experimental resolution 4.20
System mass 2811.86 kDa
Deposition year 2024
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8y5o
Equivalence Class NR_all_83717.186
BGSU version: 4.49

Compound GDP
Residue . / 801
Chain RB / 0
Non-redundant True
Interacting RNA chains YA/1
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains YA/1: rRNA
RNA family global rRNA
Volume 783.07 Å3
Hydrophobicity 0.166
Hydrophilicity 1.606
Buriedness 0.851
Don/acc character 0.928
SiteScore 1.102
D Score 0.927
Kd