HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8y5n

System information

Experimental technique Electron Microscopy
Experimental resolution 4.50
System mass 2754.15 kDa
Deposition year 2024
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8y5n
Equivalence Class NR_all_83717.186
BGSU version: 4.49

Compound GDP
Residue . / 801
Chain PB / 0
Non-redundant True
Interacting RNA chains YA/1
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains YA/1: rRNA
RNA family global rRNA
Volume 790.27 Å3
Hydrophobicity 0.132
Hydrophilicity 1.598
Buriedness 0.849
Don/acc character 0.926
SiteScore 1.101
D Score 0.929
Kd