HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8y37

System information

Experimental technique Electron Microscopy
Experimental resolution 2.53
System mass 1334.31 kDa
Deposition year 2024
Molecule type RNA/Protein
# RNA entities 1
Organism Staphylococcus
RCSB PDB Entry 8y37
Reference Ma Cong-Xuan, Li Ye, Liu Wen-Tian, Li Yun, Zhao Fei, Lian Xiao-Tian, Ding Jing, Liu Si-Meng, Liu Xie-Peng, Fan Bing-Zhi, Liu Li-Yong, Xue Feng, Li Jian, Zhang Jue-Ru, Xue Zhao, Pei Xiao-Tong, Lin Jin-Zhong, Liang Jian-Hua. . Synthetic macrolides overcoming MLSBK-resistant pathogens Cell Discovery
Equivalence Class NR_all_90633.29
BGSU version: 4.48

Compound A1D6G
Residue . / 3000
Chain EA / A
Non-redundant True
Interacting RNA chains E/A
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains E/A: rRNA
RNA family global rRNA
Volume 360.15 Å3
Hydrophobicity 0.466
Hydrophilicity 1.348
Buriedness 0.708
Don/acc character 1.057
SiteScore 1.092
D Score 0.842
Kd