Complex 8xzn
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.82 |
| System mass | 17.67 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8xzn |
| Reference | Li Chunyan, Xu Xiaochen, Geng Zhi, Zheng Luqian, Song Qianqian, Shen Xin, Wu Jingjing, zhao Jin, Li Hongcheng, He Mengqi, Tai Xiaoqing, Zhang Long, Ma Jinbiao, Dong Yuhui, Ren Aiming. . Structure-based characterization and compound identification of the wild-type THF class-II riboswitch Nucleic Acids Research |
| Equivalence Class |
NR_all_41547.3
BGSU version: 4.49 |
| Compound | H4B |
| Residue | . / 101 |
| Chain | B / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 359.81 Å3 |
| Hydrophobicity | 0.317 |
| Hydrophilicity | 0.947 |
| Buriedness | 0.733 |
| Don/acc character | 1.096 |
| SiteScore | 0.992 |
| D Score | 0.815 |
| Kd | — |
| Compound | SPM |
| Residue | . / 104 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 83.69 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 0.731 |
| Buriedness | 0.400 |
| Don/acc character | 3.127 |
| SiteScore | 0.841 |
| D Score | 0.724 |
| Kd | — |