Complex 8xze
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.34 |
| System mass | 18.50 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8xze |
| Reference | Li Chunyan, Xu Xiaochen, Geng Zhi, Zheng Luqian, Song Qianqian, Shen Xin, Wu Jingjing, zhao Jin, Li Hongcheng, He Mengqi, Tai Xiaoqing, Zhang Long, Ma Jinbiao, Dong Yuhui, Ren Aiming. . Structure-based characterization and compound identification of the wild-type THF class-II riboswitch Nucleic Acids Research |
| Equivalence Class |
NR_all_41547.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 106 |
| Chain | G / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 169.79 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 0.823 |
| Buriedness | 0.479 |
| Don/acc character | 2.170 |
| SiteScore | 0.992 |
| D Score | 0.891 |
| Kd | — |
| Compound | THG |
| Residue | . / 101 |
| Chain | B / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 653.07 Å3 |
| Hydrophobicity | 0.195 |
| Hydrophilicity | 1.014 |
| Buriedness | 0.720 |
| Don/acc character | 1.408 |
| SiteScore | 1.170 |
| D Score | 1.041 |
| Kd | — |