Complex 8w8p
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.17 |
| System mass | 445.60 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8w8p |
| Reference | Nova Ian C., Craig Jonathan M., Mazumder Abhishek, Laszlo Andrew H., Derrington Ian M., Noakes Matthew T., Brinkerhoff Henry, Yang Shuya, Vahedian-Movahed Hanif, Li Lingting, Zhang Yu, Bowman Jasmine L., Huang Jesse R., Mount Jonathan W., Ebright Richard H., Gundlach Jens H.. 2024. Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase Proceedings of the National Academy of Sciences |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 2TM |
| Residue | . / 1606 |
| Chain | Q / D |
| Non-redundant | True |
| Interacting RNA chains | I/I |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | I/I: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 389.65 Å3 |
| Hydrophobicity | 0.328 |
| Hydrophilicity | 1.375 |
| Buriedness | 0.843 |
| Don/acc character | 1.107 |
| SiteScore | 0.810 |
| D Score | 0.629 |
| Kd | — |