HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8sy6

System information

Experimental technique Electron Microscopy
Experimental resolution 3.28
System mass 410.62 kDa
Deposition year 2023
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 8sy6
Reference Oh Juntaek, Shan Zelin, Hoshika Shuichi, Xu Jun, Chong Jenny, Benner Steven A., Lyumkis Dmitry, Wang Dong. . A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase Nature Communications

Compound DGP
Residue . / 101
Chain I / T
Non-redundant True
Interacting RNA chains F/R
Volume 427.04 Å3
Hydrophobicity 0.285
Hydrophilicity 1.074
Buriedness 0.659
Don/acc character 1.250
SiteScore 0.888
D Score 0.876

Compound UTP
Residue . / 1504
Chain M / J
Non-redundant True
Interacting RNA chains F/R
Volume 457.91 Å3
Hydrophobicity 0.488
Hydrophilicity 1.307
Buriedness 0.840
Don/acc character 0.883
SiteScore 0.911
D Score 0.782