HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8sy5

System information

Experimental technique Electron Microscopy
Experimental resolution 2.70
System mass 410.28 kDa
Deposition year 2023
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 8sy5
Reference Oh Juntaek, Shan Zelin, Hoshika Shuichi, Xu Jun, Chong Jenny, Benner Steven A., Lyumkis Dmitry, Wang Dong. . A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase Nature Communications

Compound X0F
Residue . / 1504
Chain L / J
Non-redundant True
Interacting RNA chains G/R
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains G/R: synthetic construct
RNA family global synthetic construct
Volume 288.46 Å3
Hydrophobicity 0.665
Hydrophilicity 1.046
Buriedness 0.831
Don/acc character 0.630
SiteScore 0.751
D Score 0.664
Kd