Complex 8hzl
System information
Experimental technique | X-ray |
Experimental resolution | 2.60 |
System mass | 57.01 kDa |
Deposition year | 2023 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | N/A |
RCSB PDB Entry | 8hzl |
Reference | Huang Kaiyi, Song Qianqian, Fang Mengyue, Yao Deqiang, Shen Xin, Xu Xiaochen, Chen Xianjun, Zhu Linyong, Yang Yi, Ren Aiming. . Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift Nature Chemical Biology |
Compound | NI4 |
Residue | . / 111 |
Chain | M / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 256.22 Å3 |
Hydrophobicity | 0.928 |
Hydrophilicity | 0.895 |
Buriedness | 0.662 |
Don/acc character | 2.233 |
SiteScore | 1.004 |
D Score | 1.045 |
Compound | NI4 |
Residue | . / 112 |
Chain | N / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 383.47 Å3 |
Hydrophobicity | 0.772 |
Hydrophilicity | 0.973 |
Buriedness | 0.679 |
Don/acc character | 2.219 |
SiteScore | 1.001 |
D Score | 1.030 |
Compound | NI4 |
Residue | . / 113 |
Chain | O / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 393.76 Å3 |
Hydrophobicity | 0.806 |
Hydrophilicity | 1.090 |
Buriedness | 0.682 |
Don/acc character | 2.018 |
SiteScore | 0.989 |
D Score | 0.994 |
Compound | NI4 |
Residue | . / 114 |
Chain | CA / B |
Non-redundant | False |
Interacting RNA chains | B/B |
Volume | 290.86 Å3 |
Hydrophobicity | 0.815 |
Hydrophilicity | 0.895 |
Buriedness | 0.602 |
Don/acc character | 1.820 |
SiteScore | 0.964 |
D Score | 1.009 |
Compound | NI4 |
Residue | . / 115 |
Chain | DA / B |
Non-redundant | False |
Interacting RNA chains | B/B |
Volume | 274.06 Å3 |
Hydrophobicity | 0.837 |
Hydrophilicity | 0.922 |
Buriedness | 0.661 |
Don/acc character | 1.517 |
SiteScore | 0.972 |
D Score | 1.002 |
Compound | NI4 |
Residue | . / 116 |
Chain | EA / B |
Non-redundant | True |
Interacting RNA chains | B/B |
Volume | 341.97 Å3 |
Hydrophobicity | 0.575 |
Hydrophilicity | 1.028 |
Buriedness | 0.636 |
Don/acc character | 1.762 |
SiteScore | 0.961 |
D Score | 0.986 |