Complex 8hzl
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.60 |
| System mass | 57.01 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8hzl |
| Reference | Huang Kaiyi, Song Qianqian, Fang Mengyue, Yao Deqiang, Shen Xin, Xu Xiaochen, Chen Xianjun, Zhu Linyong, Yang Yi, Ren Aiming. . Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift Nature Chemical Biology |
| Equivalence Class |
NR_all_53992.3
BGSU version: 4.48 |
| Compound | NI4 |
| Residue | . / 111 |
| Chain | M / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 267.88 Å3 |
| Hydrophobicity | 1.058 |
| Hydrophilicity | 0.802 |
| Buriedness | 0.665 |
| Don/acc character | 3.520 |
| SiteScore | 1.174 |
| D Score | 1.078 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 112 |
| Chain | N / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 287.78 Å3 |
| Hydrophobicity | 0.887 |
| Hydrophilicity | 0.879 |
| Buriedness | 0.658 |
| Don/acc character | 2.670 |
| SiteScore | 1.105 |
| D Score | 0.985 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 113 |
| Chain | O / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 407.48 Å3 |
| Hydrophobicity | 0.874 |
| Hydrophilicity | 0.999 |
| Buriedness | 0.686 |
| Don/acc character | 2.538 |
| SiteScore | 1.150 |
| D Score | 1.026 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 114 |
| Chain | CA / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 301.84 Å3 |
| Hydrophobicity | 0.844 |
| Hydrophilicity | 0.843 |
| Buriedness | 0.620 |
| Don/acc character | 2.618 |
| SiteScore | 1.136 |
| D Score | 1.037 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 115 |
| Chain | DA / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 281.60 Å3 |
| Hydrophobicity | 0.915 |
| Hydrophilicity | 0.862 |
| Buriedness | 0.665 |
| Don/acc character | 2.467 |
| SiteScore | 1.128 |
| D Score | 1.015 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 116 |
| Chain | EA / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 395.48 Å3 |
| Hydrophobicity | 0.598 |
| Hydrophilicity | 0.911 |
| Buriedness | 0.660 |
| Don/acc character | 1.954 |
| SiteScore | 1.150 |
| D Score | 1.039 |
| Kd | — |