HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8hzl

System information

Experimental technique X-ray
Experimental resolution 2.60
System mass 57.01 kDa
Deposition year 2023
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 8hzl
Reference Huang Kaiyi, Song Qianqian, Fang Mengyue, Yao Deqiang, Shen Xin, Xu Xiaochen, Chen Xianjun, Zhu Linyong, Yang Yi, Ren Aiming. . Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift Nature Chemical Biology

Compound NI4
Residue . / 111
Chain M / A
Non-redundant True
Interacting RNA chains A/A
Volume 256.22 Å3
Hydrophobicity 0.928
Hydrophilicity 0.895
Buriedness 0.662
Don/acc character 2.233
SiteScore 1.004
D Score 1.045

Compound NI4
Residue . / 112
Chain N / A
Non-redundant True
Interacting RNA chains A/A
Volume 383.47 Å3
Hydrophobicity 0.772
Hydrophilicity 0.973
Buriedness 0.679
Don/acc character 2.219
SiteScore 1.001
D Score 1.030

Compound NI4
Residue . / 113
Chain O / A
Non-redundant False
Interacting RNA chains A/A
Volume 393.76 Å3
Hydrophobicity 0.806
Hydrophilicity 1.090
Buriedness 0.682
Don/acc character 2.018
SiteScore 0.989
D Score 0.994

Compound NI4
Residue . / 114
Chain CA / B
Non-redundant False
Interacting RNA chains B/B
Volume 290.86 Å3
Hydrophobicity 0.815
Hydrophilicity 0.895
Buriedness 0.602
Don/acc character 1.820
SiteScore 0.964
D Score 1.009

Compound NI4
Residue . / 115
Chain DA / B
Non-redundant False
Interacting RNA chains B/B
Volume 274.06 Å3
Hydrophobicity 0.837
Hydrophilicity 0.922
Buriedness 0.661
Don/acc character 1.517
SiteScore 0.972
D Score 1.002

Compound NI4
Residue . / 116
Chain EA / B
Non-redundant True
Interacting RNA chains B/B
Volume 341.97 Å3
Hydrophobicity 0.575
Hydrophilicity 1.028
Buriedness 0.636
Don/acc character 1.762
SiteScore 0.961
D Score 0.986