Complex 8hzk
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.00 |
| System mass | 28.49 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8hzk |
| Reference | Huang Kaiyi, Song Qianqian, Fang Mengyue, Yao Deqiang, Shen Xin, Xu Xiaochen, Chen Xianjun, Zhu Linyong, Yang Yi, Ren Aiming. . Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift Nature Chemical Biology |
| Equivalence Class |
NR_all_04219.3
BGSU version: 4.48 |
| Compound | NI4 |
| Residue | . / 116 |
| Chain | R / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 377.64 Å3 |
| Hydrophobicity | 0.824 |
| Hydrophilicity | 0.876 |
| Buriedness | 0.655 |
| Don/acc character | 2.172 |
| SiteScore | 1.153 |
| D Score | 1.048 |
| Kd | — |
| Compound | NI4 |
| Residue | . / 110 |
| Chain | BA / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 264.11 Å3 |
| Hydrophobicity | 1.140 |
| Hydrophilicity | 0.822 |
| Buriedness | 0.652 |
| Don/acc character | 4.295 |
| SiteScore | 1.162 |
| D Score | 1.063 |
| Kd | — |