HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8hzd

System information

Experimental technique X-ray
Experimental resolution 1.87
System mass 24.22 kDa
Deposition year 2023
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 8hzd
Reference Huang Kaiyi, Song Qianqian, Fang Mengyue, Yao Deqiang, Shen Xin, Xu Xiaochen, Chen Xianjun, Zhu Linyong, Yang Yi, Ren Aiming. . Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift Nature Chemical Biology

Compound O2I
Residue . / 104
Chain F / A
Non-redundant True
Interacting RNA chains A/A
Volume 435.27 Å3
Hydrophobicity 0.654
Hydrophilicity 0.967
Buriedness 0.639
Don/acc character 2.171
SiteScore 0.975
D Score 1.008

Compound O2I
Residue . / 105
Chain K / B
Non-redundant False
Interacting RNA chains B/B
Volume 376.61 Å3
Hydrophobicity 0.874
Hydrophilicity 0.975
Buriedness 0.679
Don/acc character 2.263
SiteScore 1.000
D Score 1.029