Complex 8hba
System information
Experimental technique | X-ray |
Experimental resolution | 2.64 |
System mass | 38.59 kDa |
Deposition year | 2022 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Streptococcus |
RCSB PDB Entry | 8hba |
Reference | Peng Xuemei, Liao Wenjian, Lin Xiaowei, Lilley David M J, Huang Lin. . Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets Nucleic Acids Research |
Compound | NAD |
Residue | . / 101 |
Chain | C / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 182.82 Å3 |
Hydrophobicity | 0.240 |
Hydrophilicity | 0.879 |
Buriedness | 0.621 |
Don/acc character | 2.925 |
SiteScore | 0.910 |
D Score | 0.937 |
Compound | NAD |
Residue | . / 102 |
Chain | D / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 240.44 Å3 |
Hydrophobicity | 0.105 |
Hydrophilicity | 1.458 |
Buriedness | 0.694 |
Don/acc character | 1.439 |
SiteScore | 0.997 |
D Score | 0.881 |
Compound | NAD |
Residue | . / 101 |
Chain | E / B |
Non-redundant | False |
Interacting RNA chains | B/B |
Volume | 162.92 Å3 |
Hydrophobicity | 0.299 |
Hydrophilicity | 0.882 |
Buriedness | 0.674 |
Don/acc character | 2.734 |
SiteScore | 0.850 |
D Score | 0.845 |
Compound | NMN |
Residue | . / 102 |
Chain | F / B |
Non-redundant | True |
Interacting RNA chains | B/B |
Volume | 238.38 Å3 |
Hydrophobicity | 0.077 |
Hydrophilicity | 1.452 |
Buriedness | 0.704 |
Don/acc character | 1.246 |
SiteScore | 1.004 |
D Score | 0.889 |