HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ca7

System information

Experimental technique Electron Microscopy
Experimental resolution 2.06
System mass 626.74 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8ca7
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Compound SCM
Residue . / 1603
Chain L / A
Non-redundant True
Interacting RNA chains A/A
Volume 751.86 Å3
Hydrophobicity 0.068
Hydrophilicity 1.450
Buriedness 0.810
Don/acc character 1.300
SiteScore 1.075
D Score 0.953

Compound U3B
Residue . / 1602
Chain K / A
Non-redundant True
Interacting RNA chains A/A
Volume 181.45 Å3
Hydrophobicity 0.227
Hydrophilicity 1.049
Buriedness 0.739
Don/acc character 2.607
SiteScore 0.925
D Score 0.718