Complex 8c3a
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 6408.99 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 8c3a |
| Equivalence Class |
NR_all_58155.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 3K5 |
| Residue | . / 3403 |
| Chain | JF / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 546.74 Å3 |
| Hydrophobicity | 0.198 |
| Hydrophilicity | 1.153 |
| Buriedness | 0.740 |
| Don/acc character | 0.854 |
| SiteScore | 1.178 |
| D Score | 1.008 |
| Kd | — |
| Compound | 3K5 |
| Residue | . / 3401 |
| Chain | OLA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 585.16 Å3 |
| Hydrophobicity | 0.369 |
| Hydrophilicity | 0.981 |
| Buriedness | 0.755 |
| Don/acc character | 0.839 |
| SiteScore | 1.050 |
| D Score | 1.073 |
| Kd | — |
| Compound | TIX |
| Residue | . / 3958 |
| Chain | SAA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 783.07 Å3 |
| Hydrophobicity | 0.555 |
| Hydrophilicity | 1.688 |
| Buriedness | 0.792 |
| Don/acc character | 0.701 |
| SiteScore | 1.213 |
| D Score | 0.865 |
| Kd | — |
| Compound | TIX |
| Residue | . / 3782 |
| Chain | FAB / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 783.41 Å3 |
| Hydrophobicity | 0.339 |
| Hydrophilicity | 1.283 |
| Buriedness | 0.799 |
| Don/acc character | 1.596 |
| SiteScore | 1.217 |
| D Score | 1.001 |
| Kd | — |