HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8btk

System information

Experimental technique Electron Microscopy
Experimental resolution 3.50
System mass 4037.98 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 1
Organism Oryctolagus
RCSB PDB Entry 8btk
Reference Jaskolowski Mateusz, Jomaa Ahmad, Gamerdinger Martin, Shrestha Sandeep, Leibundgut Marc, Deuerling Elke, Ban Nenad. . Molecular basis of the TRAP complex function in ER protein biogenesis Nature Structural & Molecular Biology

Compound SPM
Residue . / 4911
Chain YC / B5
Non-redundant True
Interacting RNA chains A/B5
Volume 647.93 Å3
Hydrophobicity 0.163
Hydrophilicity 1.468
Buriedness 0.792
Don/acc character 0.907
SiteScore 1.063
D Score 0.936

Compound SPM
Residue . / 4914
Chain BD / B5
Non-redundant True
Interacting RNA chains A/B5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 1909
Chain YZ / A2
Non-redundant True
Interacting RNA chains ZA/A2
Volume 657.87 Å3
Hydrophobicity 0.323
Hydrophilicity 0.980
Buriedness 0.775
Don/acc character 3.365
SiteScore 1.213
D Score 1.086