Complex 8b2l
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.20 |
| System mass | 3262.70 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Nicotiana |
| RCSB PDB Entry | 8b2l |
| Reference | Smirnova Julia, Loerke Justus, Kleinau Gunnar, Schmidt Andrea, Bürger Jörg, Meyer Etienne H., Mielke Thorsten, Scheerer Patrick, Bock Ralph, Spahn Christian M. T., Zoschke Reimo. . Structure of the actively translating plant 80S ribosome at 2.2 Å resolution Nature Plants |
| Equivalence Class |
NR_all_42556.3,
NR_all_77912.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 2017 |
| Chain | RG / h1 |
| Non-redundant | True |
| Interacting RNA chains | C/h1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/h1: rRNA |
| RNA family global | rRNA |
| Volume | 561.15 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 1.388 |
| Buriedness | 0.837 |
| Don/acc character | 1.324 |
| SiteScore | 1.243 |
| D Score | 0.990 |
| Kd | — |
| Compound | SPM |
| Residue | . / 2018 |
| Chain | SG / h1 |
| Non-redundant | True |
| Interacting RNA chains | C/h1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/h1: rRNA |
| RNA family global | rRNA |
| Volume | 724.42 Å3 |
| Hydrophobicity | 0.295 |
| Hydrophilicity | 1.048 |
| Buriedness | 0.765 |
| Don/acc character | 2.361 |
| SiteScore | 1.195 |
| D Score | 1.058 |
| Kd | — |
| Compound | SPM |
| Residue | . / 2019 |
| Chain | TG / h1 |
| Non-redundant | True |
| Interacting RNA chains | C/h1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/h1: rRNA |
| RNA family global | rRNA |
| Volume | 788.21 Å3 |
| Hydrophobicity | 0.149 |
| Hydrophilicity | 1.270 |
| Buriedness | 0.810 |
| Don/acc character | 1.635 |
| SiteScore | 1.225 |
| D Score | 1.012 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3451 |
| Chain | BK / A3 |
| Non-redundant | True |
| Interacting RNA chains | DC/A3 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | DC/A3: rRNA |
| RNA family global | rRNA |
| Volume | 791.64 Å3 |
| Hydrophobicity | 0.146 |
| Hydrophilicity | 1.398 |
| Buriedness | 0.893 |
| Don/acc character | 1.342 |
| SiteScore | 1.130 |
| D Score | 1.020 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3452 |
| Chain | CK / A3 |
| Non-redundant | True |
| Interacting RNA chains | DC/A3 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | DC/A3: rRNA |
| RNA family global | rRNA |
| Volume | 595.79 Å3 |
| Hydrophobicity | 0.139 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.868 |
| Don/acc character | 0.804 |
| SiteScore | 1.091 |
| D Score | 0.983 |
| Kd | — |