Complex 8auv
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.38 |
| System mass | 1221.47 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Nicotiana |
| RCSB PDB Entry | 8auv |
| Reference | Smirnova Julia, Loerke Justus, Kleinau Gunnar, Schmidt Andrea, Bürger Jörg, Meyer Etienne H., Mielke Thorsten, Scheerer Patrick, Bock Ralph, Spahn Christian M. T., Zoschke Reimo. . Structure of the actively translating plant 80S ribosome at 2.2 Å resolution Nature Plants |
| Equivalence Class |
NR_all_42556.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 2016 |
| Chain | UE / h |
| Non-redundant | True |
| Interacting RNA chains | C/h |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/h: rRNA |
| RNA family global | rRNA |
| Volume | 520.67 Å3 |
| Hydrophobicity | 0.058 |
| Hydrophilicity | 1.360 |
| Buriedness | 0.856 |
| Don/acc character | 1.167 |
| SiteScore | 0.844 |
| D Score | 1.010 |
| Kd | — |
| Compound | SPM |
| Residue | . / 2017 |
| Chain | VE / h |
| Non-redundant | True |
| Interacting RNA chains | C/h |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/h: rRNA |
| RNA family global | rRNA |
| Volume | 641.07 Å3 |
| Hydrophobicity | 0.363 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.789 |
| Don/acc character | 3.154 |
| SiteScore | 1.214 |
| D Score | 1.080 |
| Kd | — |
| Compound | SPM |
| Residue | . / 2018 |
| Chain | WE / h |
| Non-redundant | True |
| Interacting RNA chains | C/h |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/h: rRNA |
| RNA family global | rRNA |
| Volume | 796.79 Å3 |
| Hydrophobicity | 0.238 |
| Hydrophilicity | 1.273 |
| Buriedness | 0.811 |
| Don/acc character | 1.759 |
| SiteScore | 1.225 |
| D Score | 1.011 |
| Kd | — |