HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8a3d

System information

Experimental technique Electron Microscopy
Experimental resolution 1.67
System mass 2599.22 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8a3d
Reference Faille Alexandre, Dent Kyle C., Pellegrino Simone, Jaako Pekka, Warren Alan J. . The chemical landscape of the human ribosome at 1.67 Å resolution []

Compound EPE
Residue . / 5457
Chain LO / A
Non-redundant True
Interacting RNA chains A/A
Volume 786.50 Å3
Hydrophobicity 0.421
Hydrophilicity 1.146
Buriedness 0.772
Don/acc character 0.555
SiteScore 1.050
D Score 1.030

Compound HMT
Residue . / 5455
Chain JO / A
Non-redundant True
Interacting RNA chains A/A
Volume 332.71 Å3
Hydrophobicity 0.524
Hydrophilicity 0.879
Buriedness 0.617
Don/acc character 1.885
SiteScore 1.127
D Score 1.024

Compound SPM
Residue . / 5456
Chain KO / A
Non-redundant True
Interacting RNA chains A/A
Volume 666.45 Å3
Hydrophobicity 0.121
Hydrophilicity 2.080
Buriedness 0.864
Don/acc character 0.827
SiteScore 1.111
D Score 0.780