Complex 7zta
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.70 |
| System mass | 2203.00 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 7zta |
| Reference | Leroy Elodie C., Perry Thomas N., Renault Thibaud T., Innis C. Axel. 2023. Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs Nature Chemical Biology |
| Equivalence Class |
NR_all_83717.187,
NR_all_19831.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | OCW |
| Residue | . / 3001 |
| Chain | KF / 23S1 |
| Non-redundant | True |
| Interacting RNA chains | BB/PTR1, V/23S1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | V/23S1: rRNA, BB/PTR1: tRNA |
| RNA family global | multiple |
| Volume | 565.61 Å3 |
| Hydrophobicity | 0.846 |
| Hydrophilicity | 1.314 |
| Buriedness | 0.788 |
| Don/acc character | 0.840 |
| SiteScore | 1.210 |
| D Score | 0.985 |
| Kd | — |