HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7qiz

System information

Experimental technique Electron Microscopy
Experimental resolution 2.38
System mass 3177.26 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Solanum
RCSB PDB Entry 7qiz
Reference Cottilli Patrick, Itoh Yuzuru, Nobe Yuko, Petrov Anton S., Lisón Purificación, Taoka Masato, Amunts Alexey. . Cryo-EM structure and rRNA modification sites of a plant ribosome Plant Communications

Compound SPM
Residue . / 3479
Chain VF / 2
Non-redundant True
Interacting RNA chains QA/2
Volume 715.50 Å3
Hydrophobicity 0.303
Hydrophilicity 1.408
Buriedness 0.858
Don/acc character 1.090
SiteScore 1.107
D Score 0.996

Compound SPM
Residue . / 3480
Chain WF / 2
Non-redundant True
Interacting RNA chains QA/2
Volume 901.75 Å3
Hydrophobicity 0.146
Hydrophilicity 1.672
Buriedness 0.894
Don/acc character 0.997
SiteScore 1.131
D Score 0.931

Compound SPM
Residue . / 3482
Chain YF / 2
Non-redundant True
Interacting RNA chains SA/8, QA/2
Volume 1047.52 Å3
Hydrophobicity 0.437
Hydrophilicity 1.339
Buriedness 0.869
Don/acc character 0.953
SiteScore 1.115
D Score 1.025