HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7qiw

System information

Experimental technique Electron Microscopy
Experimental resolution 2.35
System mass 1992.65 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Solanum
RCSB PDB Entry 7qiw
Reference Cottilli Patrick, Itoh Yuzuru, Nobe Yuko, Petrov Anton S., Lisón Purificación, Taoka Masato, Amunts Alexey. . Cryo-EM structure and rRNA modification sites of a plant ribosome Plant Communications

Compound SPM
Residue . / 3480
Chain OE / 2
Non-redundant True
Interacting RNA chains QA/2
Volume 713.44 Å3
Hydrophobicity 0.250
Hydrophilicity 1.425
Buriedness 0.860
Don/acc character 1.094
SiteScore 1.108
D Score 0.992

Compound SPM
Residue . / 3481
Chain PE / 2
Non-redundant True
Interacting RNA chains QA/2
Volume 906.21 Å3
Hydrophobicity 0.166
Hydrophilicity 1.651
Buriedness 0.893
Don/acc character 0.971
SiteScore 1.131
D Score 0.938

Compound SPM
Residue . / 3483
Chain RE / 2
Non-redundant True
Interacting RNA chains SA/8, QA/2
Volume 960.74 Å3
Hydrophobicity 0.381
Hydrophilicity 1.406
Buriedness 0.883
Don/acc character 0.791
SiteScore 1.123
D Score 1.011