Complex 7pub
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.70 |
| System mass | 3617.43 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Trypanosoma |
| RCSB PDB Entry | 7pub |
| Reference | Lenarčič Tea, Niemann Moritz, Ramrath David J. F., Calderaro Salvatore, Flügel Timo, Saurer Martin, Leibundgut Marc, Boehringer Daniel, Prange Céline, Horn Elke K., Schneider André, Ban Nenad. 2022. Mitoribosomal small subunit maturation involves formation of initiation-like complexes Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_60828.8
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | UTP |
| Residue | . / 401 |
| Chain | GC / DJ |
| Non-redundant | True |
| Interacting RNA chains | A/CA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/CA: rRNA |
| RNA family global | rRNA |
| Volume | 254.85 Å3 |
| Hydrophobicity | 0.215 |
| Hydrophilicity | 1.459 |
| Buriedness | 0.742 |
| Don/acc character | 0.602 |
| SiteScore | 0.923 |
| D Score | 0.773 |
| Kd | — |