HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7k9y

System information

Experimental technique X-ray
Experimental resolution 3.20
System mass 116.97 kDa
Deposition year 2020
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 7k9y
Reference Lentzsch Alfred M., Stamos Jennifer L., Yao Jun, Russell Rick, Lambowitz Alan M.. . Structural basis for template switching by a group II intron–encoded non-LTR-retroelement reverse transcriptase Journal of Biological Chemistry

Compound DTP
Residue . / 501
Chain I / A
Non-redundant True
Interacting RNA chains G/G
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains G/G: synthetic construct
RNA family global synthetic construct
Volume 582.07 Å3
Hydrophobicity 0.545
Hydrophilicity 1.452
Buriedness 0.860
Don/acc character 0.498
SiteScore 1.108
D Score 0.983
Kd

Compound DTP
Residue . / 501
Chain M / D
Non-redundant True
Interacting RNA chains H/H
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains H/H: synthetic construct
RNA family global synthetic construct
Volume 618.09 Å3
Hydrophobicity 0.500
Hydrophilicity 1.439
Buriedness 0.847
Don/acc character 0.405
SiteScore 1.100
D Score 0.979
Kd