Complex 6ywe
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.99 |
| System mass | 4131.51 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Neurospora |
| RCSB PDB Entry | 6ywe |
| Reference | Itoh Yuzuru, Naschberger Andreas, Mortezaei Narges, Herrmann Johannes M., Amunts Alexey. 2020. Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi Nature Communications |
| Equivalence Class |
NR_all_72592.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | NAD |
| Residue | . / 4301 |
| Chain | DJ / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 337.17 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.692 |
| Buriedness | 0.821 |
| Don/acc character | 0.616 |
| SiteScore | 0.852 |
| D Score | 0.586 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3636 |
| Chain | LH / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 837.95 Å3 |
| Hydrophobicity | 0.103 |
| Hydrophilicity | 1.754 |
| Buriedness | 0.861 |
| Don/acc character | 0.888 |
| SiteScore | 1.109 |
| D Score | 0.885 |
| Kd | — |