HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ypu

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 1183.15 kDa
Deposition year 2020
Molecule type RNA/Protein
# RNA entities 1
Organism Acinetobacter
RCSB PDB Entry 6ypu
Reference Nicholson David, Edwards Thomas A., O'Neill Alex J., Ranson Neil A.. . Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics Structure
Equivalence Class NR_all_43481.6
BGSU version: 4.48

Compound AKN
Residue . / 1607
Chain WB / 4
Non-redundant True
Interacting RNA chains B/4
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/4: rRNA
RNA family global rRNA
Volume 48.02 Å3
Hydrophobicity 0.210
Hydrophilicity 0.806
Buriedness 0.552
Don/acc character 3.218
SiteScore 0.716
D Score 0.519
Kd