HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6yml

System information

Experimental technique X-ray
Experimental resolution 2.17
System mass 23.70 kDa
Deposition year 2020
Molecule type RNA
# RNA entities 1
Organism Roseobacter
RCSB PDB Entry 6yml
Reference Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research

Compound AMP
Residue . / 101
Chain E / A
Non-redundant False
Interacting RNA chains A/A, B/B
Volume 31.21 Å3
Hydrophobicity 0.552
Hydrophilicity 0.909
Buriedness 0.672
Don/acc character 1.193
SiteScore 0.529
D Score 0.240

Compound DSH
Residue . / 102
Chain F / A
Non-redundant False
Interacting RNA chains A/A, B/B
Volume 359.46 Å3
Hydrophobicity 0.401
Hydrophilicity 0.987
Buriedness 0.663
Don/acc character 2.252
SiteScore 1.137
D Score 1.016

Compound DSH
Residue . / 101
Chain H / C
Non-redundant False
Interacting RNA chains D/D, C/C
Volume 409.20 Å3
Hydrophobicity 0.353
Hydrophilicity 0.986
Buriedness 0.622
Don/acc character 1.555
SiteScore 1.110
D Score 0.992