HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ymk

System information

Experimental technique X-ray
Experimental resolution 2.03
System mass 70.63 kDa
Deposition year 2020
Molecule type RNA
# RNA entities 1
Organism Roseobacter
RCSB PDB Entry 6ymk
Reference Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research

Compound MTA
Residue . / 101
Chain O / C
Non-redundant True
Interacting RNA chains D/D, J/N, C/C
Volume 423.26 Å3
Hydrophobicity 0.413
Hydrophilicity 1.020
Buriedness 0.660
Don/acc character 1.629
SiteScore 0.979
D Score 1.004

Compound MTA
Residue . / 101
Chain U / I
Non-redundant True
Interacting RNA chains H/J, G/I, B/B
Volume 360.49 Å3
Hydrophobicity 0.444
Hydrophilicity 1.078
Buriedness 0.708
Don/acc character 1.874
SiteScore 1.007
D Score 1.014

Compound MTA
Residue . / 101
Chain Y / O
Non-redundant True
Interacting RNA chains K/O, F/G, L/P
Volume 395.14 Å3
Hydrophobicity 0.292
Hydrophilicity 1.002
Buriedness 0.642
Don/acc character 1.485
SiteScore 0.970
D Score 0.999