Complex 6ymk
System information
Experimental technique | X-ray |
Experimental resolution | 2.03 |
System mass | 70.63 kDa |
Deposition year | 2020 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Roseobacter |
RCSB PDB Entry | 6ymk |
Reference | Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research |
Compound | MTA |
Residue | . / 101 |
Chain | O / C |
Non-redundant | True |
Interacting RNA chains | D/D, J/N, C/C |
Volume | 423.26 Å3 |
Hydrophobicity | 0.413 |
Hydrophilicity | 1.020 |
Buriedness | 0.660 |
Don/acc character | 1.629 |
SiteScore | 0.979 |
D Score | 1.004 |
Compound | MTA |
Residue | . / 101 |
Chain | U / I |
Non-redundant | True |
Interacting RNA chains | H/J, G/I, B/B |
Volume | 360.49 Å3 |
Hydrophobicity | 0.444 |
Hydrophilicity | 1.078 |
Buriedness | 0.708 |
Don/acc character | 1.874 |
SiteScore | 1.007 |
D Score | 1.014 |
Compound | MTA |
Residue | . / 101 |
Chain | Y / O |
Non-redundant | True |
Interacting RNA chains | K/O, F/G, L/P |
Volume | 395.14 Å3 |
Hydrophobicity | 0.292 |
Hydrophilicity | 1.002 |
Buriedness | 0.642 |
Don/acc character | 1.485 |
SiteScore | 0.970 |
D Score | 0.999 |