Complex 6ymi
System information
Experimental technique | X-ray |
Experimental resolution | 2.50 |
System mass | 72.85 kDa |
Deposition year | 2020 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Roseobacter |
RCSB PDB Entry | 6ymi |
Reference | Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research |
Compound | AMP |
Residue | . / 102 |
Chain | Q / C |
Non-redundant | True |
Interacting RNA chains | D/D, J/N, C/C |
Volume | 439.04 Å3 |
Hydrophobicity | 0.473 |
Hydrophilicity | 1.105 |
Buriedness | 0.668 |
Don/acc character | 1.674 |
SiteScore | 0.980 |
D Score | 0.980 |
Compound | AMP |
Residue | . / 102 |
Chain | V / I |
Non-redundant | True |
Interacting RNA chains | H/J, G/I |
Volume | 394.45 Å3 |
Hydrophobicity | 0.526 |
Hydrophilicity | 1.036 |
Buriedness | 0.716 |
Don/acc character | 1.885 |
SiteScore | 1.013 |
D Score | 1.032 |
Compound | AMP |
Residue | . / 201 |
Chain | Z / O |
Non-redundant | True |
Interacting RNA chains | L/P, K/O |
Volume | 402.68 Å3 |
Hydrophobicity | 0.412 |
Hydrophilicity | 1.070 |
Buriedness | 0.667 |
Don/acc character | 1.687 |
SiteScore | 0.979 |
D Score | 0.991 |
Compound | CBV |
Residue | . / 101 |
Chain | P / C |
Non-redundant | False |
Interacting RNA chains | C/C |
Volume | 32.24 Å3 |
Hydrophobicity | 0.243 |
Hydrophilicity | 0.937 |
Buriedness | 0.559 |
Don/acc character | 0.691 |
SiteScore | 0.530 |
D Score | 0.461 |
Compound | CBV |
Residue | . / 101 |
Chain | U / I |
Non-redundant | True |
Interacting RNA chains | G/I |
Volume | 29.50 Å3 |
Hydrophobicity | 0.370 |
Hydrophilicity | 0.882 |
Buriedness | 0.577 |
Don/acc character | 0.483 |
SiteScore | 0.448 |
D Score | 0.356 |