Complex 6ymi
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 72.85 kDa |
| Deposition year | 2020 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Roseobacter |
| RCSB PDB Entry | 6ymi |
| Reference | Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research |
| Compound | AMP |
| Residue | . / 102 |
| Chain | Q / C |
| Non-redundant | True |
| Interacting RNA chains | C/C, D/D, J/N |
| Volume | 433.89 Å3 |
| Hydrophobicity | 0.310 |
| Hydrophilicity | 1.204 |
| Buriedness | 0.695 |
| Don/acc character | 1.045 |
| SiteScore | 0.998 |
| D Score | 0.965 |
| Compound | AMP |
| Residue | . / 102 |
| Chain | V / I |
| Non-redundant | True |
| Interacting RNA chains | H/J, G/I |
| Volume | 386.90 Å3 |
| Hydrophobicity | 0.375 |
| Hydrophilicity | 1.197 |
| Buriedness | 0.727 |
| Don/acc character | 0.989 |
| SiteScore | 1.019 |
| D Score | 0.986 |
| Compound | AMP |
| Residue | . / 102 |
| Chain | AA / O |
| Non-redundant | True |
| Interacting RNA chains | L/P, K/O |
| Volume | 391.36 Å3 |
| Hydrophobicity | 0.312 |
| Hydrophilicity | 1.180 |
| Buriedness | 0.688 |
| Don/acc character | 0.944 |
| SiteScore | 0.994 |
| D Score | 0.968 |
| Compound | CBV |
| Residue | . / 101 |
| Chain | P / C |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| Volume | 31.90 Å3 |
| Hydrophobicity | 0.417 |
| Hydrophilicity | 0.840 |
| Buriedness | 0.558 |
| Don/acc character | 0.282 |
| SiteScore | 0.540 |
| D Score | 0.481 |
| Compound | CBV |
| Residue | . / 101 |
| Chain | U / I |
| Non-redundant | False |
| Interacting RNA chains | G/I |
| Volume | 29.50 Å3 |
| Hydrophobicity | 0.479 |
| Hydrophilicity | 0.845 |
| Buriedness | 0.580 |
| Don/acc character | 0.318 |
| SiteScore | 0.445 |
| D Score | 0.354 |