HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ylb

System information

Experimental technique X-ray
Experimental resolution 2.12
System mass 71.30 kDa
Deposition year 2020
Molecule type RNA
# RNA entities 1
Organism Roseobacter
RCSB PDB Entry 6ylb
Reference Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research

Compound SAM
Residue . / 101
Chain O / C
Non-redundant True
Interacting RNA chains D/D, J/N, C/C
Volume 416.74 Å3
Hydrophobicity 0.455
Hydrophilicity 0.979
Buriedness 0.653
Don/acc character 1.874
SiteScore 0.982
D Score 1.013

Compound SAM
Residue . / 101
Chain R / I
Non-redundant True
Interacting RNA chains G/I, H/J, B/B
Volume 381.07 Å3
Hydrophobicity 0.453
Hydrophilicity 0.912
Buriedness 0.633
Don/acc character 2.352
SiteScore 0.982
D Score 1.023

Compound SAM
Residue . / 101
Chain U / O
Non-redundant True
Interacting RNA chains K/O, F/G, L/P
Volume 385.53 Å3
Hydrophobicity 0.319
Hydrophilicity 1.008
Buriedness 0.641
Don/acc character 1.499
SiteScore 0.968
D Score 0.996