Complex 6ylb
System information
Experimental technique | X-ray |
Experimental resolution | 2.12 |
System mass | 71.30 kDa |
Deposition year | 2020 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Roseobacter |
RCSB PDB Entry | 6ylb |
Reference | Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research |
Compound | SAM |
Residue | . / 101 |
Chain | O / C |
Non-redundant | True |
Interacting RNA chains | D/D, J/N, C/C |
Volume | 416.74 Å3 |
Hydrophobicity | 0.455 |
Hydrophilicity | 0.979 |
Buriedness | 0.653 |
Don/acc character | 1.874 |
SiteScore | 0.982 |
D Score | 1.013 |
Compound | SAM |
Residue | . / 101 |
Chain | R / I |
Non-redundant | True |
Interacting RNA chains | G/I, H/J, B/B |
Volume | 381.07 Å3 |
Hydrophobicity | 0.453 |
Hydrophilicity | 0.912 |
Buriedness | 0.633 |
Don/acc character | 2.352 |
SiteScore | 0.982 |
D Score | 1.023 |
Compound | SAM |
Residue | . / 101 |
Chain | U / O |
Non-redundant | True |
Interacting RNA chains | K/O, F/G, L/P |
Volume | 385.53 Å3 |
Hydrophobicity | 0.319 |
Hydrophilicity | 1.008 |
Buriedness | 0.641 |
Don/acc character | 1.499 |
SiteScore | 0.968 |
D Score | 0.996 |