HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ylb

System information

Experimental technique X-ray
Experimental resolution 2.12
System mass 71.30 kDa
Deposition year 2020
Molecule type RNA
# RNA entities 1
Organism Roseobacter
RCSB PDB Entry 6ylb
Reference Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research

Compound SAM
Residue . / 101
Chain O / C
Non-redundant True
Interacting RNA chains J/N, C/C, D/D
Volume 400.62 Å3
Hydrophobicity 0.311
Hydrophilicity 1.140
Buriedness 0.685
Don/acc character 1.127
SiteScore 0.991
D Score 0.979

Compound SAM
Residue . / 101
Chain R / I
Non-redundant True
Interacting RNA chains G/I, H/J, B/B
Volume 338.20 Å3
Hydrophobicity 0.469
Hydrophilicity 1.018
Buriedness 0.679
Don/acc character 0.801
SiteScore 0.992
D Score 1.016

Compound SAM
Residue . / 101
Chain U / O
Non-redundant True
Interacting RNA chains F/G, L/P, K/O
Volume 366.32 Å3
Hydrophobicity 0.175
Hydrophilicity 1.123
Buriedness 0.673
Don/acc character 0.878
SiteScore 0.983
D Score 0.978