Complex 6yl5
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.70 |
| System mass | 140.16 kDa |
| Deposition year | 2020 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Roseobacter |
| RCSB PDB Entry | 6yl5 |
| Reference | Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research |
| Compound | SAH |
| Residue | . / 101 |
| Chain | M / A |
| Non-redundant | False |
| Interacting RNA chains | A/A, B/B |
| Volume | 384.16 Å3 |
| Hydrophobicity | 0.466 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.676 |
| Don/acc character | 2.082 |
| SiteScore | 1.144 |
| D Score | 1.020 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | T / B |
| Non-redundant | False |
| Interacting RNA chains | A/A, B/B, G/G |
| Volume | 82.66 Å3 |
| Hydrophobicity | 0.212 |
| Hydrophilicity | 0.991 |
| Buriedness | 0.572 |
| Don/acc character | 2.769 |
| SiteScore | 0.800 |
| D Score | 0.607 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | W / C |
| Non-redundant | False |
| Interacting RNA chains | C/C, J/J, D/D |
| Volume | 436.64 Å3 |
| Hydrophobicity | 0.241 |
| Hydrophilicity | 1.057 |
| Buriedness | 0.642 |
| Don/acc character | 1.641 |
| SiteScore | 1.113 |
| D Score | 0.981 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | AA / E |
| Non-redundant | False |
| Interacting RNA chains | E/E, F/F |
| Volume | 448.30 Å3 |
| Hydrophobicity | 0.247 |
| Hydrophilicity | 1.017 |
| Buriedness | 0.651 |
| Don/acc character | 1.638 |
| SiteScore | 1.123 |
| D Score | 0.999 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | EA / F |
| Non-redundant | False |
| Interacting RNA chains | E/E, K/K, F/F |
| Volume | 83.69 Å3 |
| Hydrophobicity | 0.243 |
| Hydrophilicity | 0.899 |
| Buriedness | 0.523 |
| Don/acc character | 3.272 |
| SiteScore | 0.773 |
| D Score | 0.593 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | FA / G |
| Non-redundant | False |
| Interacting RNA chains | H/H, B/B, G/G |
| Volume | 377.30 Å3 |
| Hydrophobicity | 0.300 |
| Hydrophilicity | 1.038 |
| Buriedness | 0.653 |
| Don/acc character | 1.774 |
| SiteScore | 1.121 |
| D Score | 0.994 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | JA / I |
| Non-redundant | False |
| Interacting RNA chains | I/I, J/J |
| Volume | 387.25 Å3 |
| Hydrophobicity | 0.431 |
| Hydrophilicity | 0.956 |
| Buriedness | 0.681 |
| Don/acc character | 1.894 |
| SiteScore | 1.155 |
| D Score | 1.037 |
| Compound | SAH |
| Residue | . / 102 |
| Chain | KA / I |
| Non-redundant | False |
| Interacting RNA chains | C/C, I/I, J/J |
| Volume | 79.58 Å3 |
| Hydrophobicity | 0.390 |
| Hydrophilicity | 0.949 |
| Buriedness | 0.567 |
| Don/acc character | 2.704 |
| SiteScore | 0.768 |
| D Score | 0.571 |
| Compound | SAH |
| Residue | . / 101 |
| Chain | NA / K |
| Non-redundant | False |
| Interacting RNA chains | F/F, K/K, L/L |
| Volume | 370.10 Å3 |
| Hydrophobicity | 0.285 |
| Hydrophilicity | 0.958 |
| Buriedness | 0.635 |
| Don/acc character | 1.447 |
| SiteScore | 1.124 |
| D Score | 1.009 |