HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6yl5

System information

Experimental technique X-ray
Experimental resolution 1.70
System mass 140.16 kDa
Deposition year 2020
Molecule type RNA
# RNA entities 1
Organism Roseobacter
RCSB PDB Entry 6yl5
Reference Huang Lin, Liao Ting-Wei, Wang Jia, Ha Taekjip, Lilley David M J. . Crystal structure and ligand-induced folding of the SAM/SAH riboswitch Nucleic Acids Research

Compound SAH
Residue . / 101
Chain W / C
Non-redundant True
Interacting RNA chains C/C, J/J, D/D
Volume 428.41 Å3
Hydrophobicity 0.304
Hydrophilicity 1.159
Buriedness 0.670
Don/acc character 1.178
SiteScore 0.981
D Score 0.964

Compound SAH
Residue . / 101
Chain FA / G
Non-redundant True
Interacting RNA chains B/B, G/G, H/H
Volume 378.33 Å3
Hydrophobicity 0.366
Hydrophilicity 1.095
Buriedness 0.663
Don/acc character 1.096
SiteScore 0.977
D Score 0.981

Compound SAH
Residue . / 101
Chain NA / K
Non-redundant True
Interacting RNA chains K/K, L/L, F/F
Volume 359.81 Å3
Hydrophobicity 0.292
Hydrophilicity 1.019
Buriedness 0.654
Don/acc character 1.104
SiteScore 0.975
D Score 1.000