Complex 6xqd
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 4470.35 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6xqd |
| Reference | Batool Zahra, Lomakin Ivan B., Polikanov Yury S., Bunick Christopher G.. . Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.48 |
| Compound | V7A |
| Residue | . / 1835 |
| Chain | JJB / 1a |
| Non-redundant | True |
| Interacting RNA chains | FA/1a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | FA/1a: rRNA |
| RNA family global | rRNA |
| Volume | 124.51 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.604 |
| Buriedness | 0.690 |
| Don/acc character | 0.814 |
| SiteScore | 0.743 |
| D Score | 0.726 |
| Kd | — |
| Compound | V7A |
| Residue | . / 3210 |
| Chain | RCD / 2a |
| Non-redundant | True |
| Interacting RNA chains | HC/2a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | HC/2a: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |