HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6xqd

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 4470.35 kDa
Deposition year 2020
Molecule type RNA/Protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 6xqd
Reference Batool Zahra, Lomakin Ivan B., Polikanov Yury S., Bunick Christopher G.. . Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome Proceedings of the National Academy of Sciences

Compound V7A
Residue . / 1835
Chain JJB / 1a
Non-redundant True
Interacting RNA chains FA/1a
Volume 162.92 Å3
Hydrophobicity 0.525
Hydrophilicity 1.492
Buriedness 0.702
Don/acc character 2.563
SiteScore 0.823
D Score 0.644

Compound V7A
Residue . / 3210
Chain RCD / 2a
Non-redundant False
Interacting RNA chains HC/2a
Volume 134.46 Å3
Hydrophobicity 0.068
Hydrophilicity 1.335
Buriedness 0.758
Don/acc character 1.598
SiteScore 0.911
D Score 0.795