HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6xhx

System information

Experimental technique X-ray
Experimental resolution 2.55
System mass 4426.86 kDa
Deposition year 2020
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 6xhx
Reference Svetlov Maxim S., Syroegin Egor A., Aleksandrova Elena V., Atkinson Gemma C., Gregory Steven T., Mankin Alexander S., Polikanov Yury S.. . Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance Nature Chemical Biology

Compound ARG
Residue . / 233
Chain QRA / 1B
Non-redundant True
Interacting RNA chains B/1B
Volume 125.20 Å3
Hydrophobicity 0.029
Hydrophilicity 1.949
Buriedness 0.562
Don/acc character 1.013
SiteScore 0.939
D Score 0.488

Compound ARG
Residue . / 319
Chain JTA / 1F
Non-redundant True
Interacting RNA chains A/1A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound ERY
Residue . / 4021
Chain IQA / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 559.43 Å3
Hydrophobicity 0.277
Hydrophilicity 1.736
Buriedness 0.748
Don/acc character 0.425
SiteScore 1.183
D Score 0.823

Compound ERY
Residue . / 3734
Chain SKC / 2A
Non-redundant True
Interacting RNA chains BB/2A
Volume 658.90 Å3
Hydrophobicity 0.673
Hydrophilicity 1.297
Buriedness 0.747
Don/acc character 0.699
SiteScore 1.183
D Score 0.965