Complex 6wzs
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.23 |
| System mass | 49.15 kDa |
| Deposition year | 2020 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Fusobacterium |
| RCSB PDB Entry | 6wzs |
| Reference | Tran Brandon, Pichling Patricio, Tenney Logan, Connelly Colleen M., Moon Michelle H., Ferré-D’Amaré Adrian R., Schneekloth John S., Jones Christopher P.. 2020. Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design Cell Chemical Biology |
| Equivalence Class |
NR_all_72776.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | UG4 |
| Residue | . / 107 |
| Chain | I / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 200.31 Å3 |
| Hydrophobicity | 0.095 |
| Hydrophilicity | 1.599 |
| Buriedness | 0.802 |
| Don/acc character | 1.160 |
| SiteScore | 1.010 |
| D Score | 0.632 |
| Kd | — |
| Compound | UG4 |
| Residue | . / 107 |
| Chain | P / A |
| Non-redundant | True |
| Interacting RNA chains | B/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 373.53 Å3 |
| Hydrophobicity | 0.195 |
| Hydrophilicity | 1.084 |
| Buriedness | 0.681 |
| Don/acc character | 1.274 |
| SiteScore | 1.040 |
| D Score | 0.869 |
| Kd | — |