Complex 6woo
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 3121.30 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 6woo |
| Reference | Wang Jinfan, Wang Jing, Shin Byung-Sik, Kim Joo-Ran, Dever Thomas E., Puglisi Joseph D., Fernández Israel S.. 2020. Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex Nature Communications |
| Equivalence Class |
NR_all_90506.85
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GDP |
| Residue | . / 1101 |
| Chain | MC / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/5 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/5: rRNA |
| RNA family global | rRNA |
| Volume | 604.02 Å3 |
| Hydrophobicity | 0.191 |
| Hydrophilicity | 1.656 |
| Buriedness | 0.836 |
| Don/acc character | 1.360 |
| SiteScore | 1.092 |
| D Score | 0.902 |
| Kd | — |