Complex 6v9d
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 19.83 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6v9d |
| Reference | Trachman Robert J., Cojocaru Razvan, Wu Di, Piszczek Grzegorz, Ryckelynck Michael, Unrau Peter J., Ferré-D’Amaré Adrian R.. . Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair Structure |
| Equivalence Class |
NR_all_14193.3
BGSU version: 4.48 |
| Compound | QW4 |
| Residue | . / 101 |
| Chain | C / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 112.16 Å3 |
| Hydrophobicity | 0.693 |
| Hydrophilicity | 0.728 |
| Buriedness | 0.705 |
| Don/acc character | 2.818 |
| SiteScore | 0.801 |
| D Score | 0.595 |
| Kd | — |
| Compound | QW4 |
| Residue | . / 102 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 350.20 Å3 |
| Hydrophobicity | 1.435 |
| Hydrophilicity | 0.911 |
| Buriedness | 0.775 |
| Don/acc character | 2.548 |
| SiteScore | 1.226 |
| D Score | 1.108 |
| Kd | — |
| Compound | QW4 |
| Residue | . / 101 |
| Chain | H / E |
| Non-redundant | True |
| Interacting RNA chains | B/E |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/E: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 327.57 Å3 |
| Hydrophobicity | 0.825 |
| Hydrophilicity | 0.611 |
| Buriedness | 0.652 |
| Don/acc character | 4.515 |
| SiteScore | 1.202 |
| D Score | 1.132 |
| Kd | — |