Complex 6v9b
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.40 |
| System mass | 19.71 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6v9b |
| Reference | Trachman Robert J., Cojocaru Razvan, Wu Di, Piszczek Grzegorz, Ryckelynck Michael, Unrau Peter J., Ferré-D’Amaré Adrian R.. . Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair Structure |
| Equivalence Class |
NR_all_14193.3
BGSU version: 4.48 |
| Compound | QSA |
| Residue | . / 101 |
| Chain | C / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 92.27 Å3 |
| Hydrophobicity | 1.262 |
| Hydrophilicity | 0.671 |
| Buriedness | 0.646 |
| Don/acc character | 3.151 |
| SiteScore | 0.881 |
| D Score | 0.717 |
| Kd | — |
| Compound | QSA |
| Residue | . / 102 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 345.40 Å3 |
| Hydrophobicity | 1.706 |
| Hydrophilicity | 0.856 |
| Buriedness | 0.780 |
| Don/acc character | 1.906 |
| SiteScore | 1.240 |
| D Score | 1.129 |
| Kd | — |
| Compound | QSA |
| Residue | . / 101 |
| Chain | G / D |
| Non-redundant | True |
| Interacting RNA chains | B/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/D: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |