Complex 6up0
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 25.50 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6up0 |
| Reference | Jeng Sunny C.Y., Trachman Robert J., Weissenboeck Florian, Truong Lynda, Link Katie A., Jepsen Mette D.E., Knutson Jay R., Andersen Ebbe S., Ferré-D'Amaré Adrian R., Unrau Peter J.. . Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET RNA |
| Equivalence Class |
NR_all_08239.3
BGSU version: 4.48 |
| Compound | YO3 |
| Residue | . / 104 |
| Chain | F / C |
| Non-redundant | True |
| Interacting RNA chains | A/C |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/C: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 202.71 Å3 |
| Hydrophobicity | 0.765 |
| Hydrophilicity | 0.759 |
| Buriedness | 0.575 |
| Don/acc character | 2.848 |
| SiteScore | 1.122 |
| D Score | 1.038 |
| Kd | — |
| Compound | YO3 |
| Residue | . / 104 |
| Chain | K / D |
| Non-redundant | True |
| Interacting RNA chains | B/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/D: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 182.82 Å3 |
| Hydrophobicity | 1.094 |
| Hydrophilicity | 0.751 |
| Buriedness | 0.620 |
| Don/acc character | 1.881 |
| SiteScore | 1.088 |
| D Score | 0.983 |
| Kd | — |