Complex 6tz2
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.50 |
| System mass | 231.98 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Cypovirus |
| RCSB PDB Entry | 6tz2 |
| Reference | Cui Yanxiang, Zhang Yinong, Zhou Kang, Sun Jingchen, Zhou Z. Hong. 2019. Conservative transcription in three steps visualized in a double-stranded RNA virus Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_22144.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ATP |
| Residue | . / 1301 |
| Chain | F / A |
| Non-redundant | True |
| Interacting RNA chains | D/N |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/N: unknown |
| RNA family global | unknown |
| Volume | 515.19 Å3 |
| Hydrophobicity | 0.373 |
| Hydrophilicity | 1.191 |
| Buriedness | 0.763 |
| Don/acc character | 0.747 |
| SiteScore | 1.043 |
| D Score | 1.009 |
| Kd | — |
| Compound | UTP |
| Residue | . / 1302 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | C/M, E/T |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/M: unknown, E/T: unknown |
| RNA family global | unknown |
| Volume | 699.03 Å3 |
| Hydrophobicity | 0.349 |
| Hydrophilicity | 1.489 |
| Buriedness | 0.842 |
| Don/acc character | 0.686 |
| SiteScore | 1.096 |
| D Score | 0.960 |
| Kd | — |