Complex 6qul
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 1319.25 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 6qul |
| Reference | Scaiola Alain, Leibundgut Marc, Boehringer Daniel, Caspers Patrick, Bur Daniel, Locher Hans H., Rueedi Georg, Ritz Daniel. 2019. Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic Scientific Reports |
| Equivalence Class |
NR_all_83717.187,
NR_all_10157.185,
NR_all_52422.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | AMP |
| Residue | . / 3001 |
| Chain | HA / A |
| Non-redundant | True |
| Interacting RNA chains | B/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/A: rRNA |
| RNA family global | rRNA |
| Volume | 402.34 Å3 |
| Hydrophobicity | 0.209 |
| Hydrophilicity | 1.596 |
| Buriedness | 0.701 |
| Don/acc character | 1.030 |
| SiteScore | 1.002 |
| D Score | 0.840 |
| Kd | — |
| Compound | JJH |
| Residue | . / 3370 |
| Chain | MO / A |
| Non-redundant | False |
| Interacting RNA chains | A/1, B/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/1: tRNA, B/A: rRNA |
| RNA family global | multiple |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |