Complex 6of1
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 4573.56 kDa |
| Deposition year | 2019 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6of1 |
| Reference | Khabibullina Nelli F., Tereshchenkov Andrey G., Komarova Ekaterina S., Syroegin Egor A., Shiriaev Dmitrii I., Paleskava Alena, Kartsev Victor G., Bogdanov Alexey A., Konevega Andrey L., Dontsova Olga A., Sergiev Petr V., Osterman Ilya A., Polikanov Yury S.. . Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides Antimicrobial Agents and Chemotherapy |
| Equivalence Class |
NR_all_97519.80
BGSU version: 4.48 |
| Compound | DI0 |
| Residue | . / 4098 |
| Chain | NTA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 643.81 Å3 |
| Hydrophobicity | 0.308 |
| Hydrophilicity | 1.761 |
| Buriedness | 0.771 |
| Don/acc character | 0.391 |
| SiteScore | 1.199 |
| D Score | 0.828 |
| Kd | — |
| Compound | DI0 |
| Residue | . / 3846 |
| Chain | BCC / 2A |
| Non-redundant | True |
| Interacting RNA chains | B/2A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/2A: rRNA |
| RNA family global | rRNA |
| Volume | 526.51 Å3 |
| Hydrophobicity | 0.558 |
| Hydrophilicity | 1.454 |
| Buriedness | 0.757 |
| Don/acc character | 0.505 |
| SiteScore | 1.189 |
| D Score | 0.920 |
| Kd | — |