Complex 6od9
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 4.10 |
| System mass | 49.58 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Fusobacterium |
| RCSB PDB Entry | 6od9 |
| Reference | Jones Christopher, Tran Brandon, Conrad Chelsie, Stagno Jason, Trachman Robert, Fischer Pontus, Meents Alke, Ferré-D'Amaré Adrian. 2019. Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser Acta Crystallographica Section F Structural Biology Communications |
| Equivalence Class |
NR_all_72776.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | AMZ |
| Residue | . / 102 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 440.76 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 1.031 |
| Buriedness | 0.674 |
| Don/acc character | 1.862 |
| SiteScore | 1.016 |
| D Score | 0.854 |
| Kd | — |
| Compound | AMZ |
| Residue | . / 102 |
| Chain | I / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 394.79 Å3 |
| Hydrophobicity | 0.143 |
| Hydrophilicity | 1.111 |
| Buriedness | 0.691 |
| Don/acc character | 1.704 |
| SiteScore | 1.071 |
| D Score | 0.768 |
| Kd | — |